Settings used

alignment         : ./AllMaster_Ch2Tenrex_MrBayes.phy
branchlengths     : unlinked
models            : GTR+I, GTR+G, F81, F81+G, SYM, F81+I, JC, HKY, K80, HKY+I+G, K80+I, SYM+G, SYM+I, K80+G, GTR, HKY+G, SYM+I+G, HKY+I, F81+I+G, JC+G, GTR+I+G, JC+I, K80+I+G, JC+I+G
model_selection   : bic
search            : greedy


Best partitioning scheme

Scheme Name       : step_23
Scheme lnL        : -58499.36445
Scheme BIC        : 119813.842887
Number of params  : 311
Number of sites   : 8534
Number of subsets : 4

Subset | Best Model | Subset Partitions              | Subset Sites                   | Alignment                               
1      | HKY+I+G    | ND2_pos1, ND2_pos2             | 1072-2115\3, 1073-2115\3       | ./analysis/phylofiles/bdd55ba724c005adac4bdaf7e5ca9f65.phy
2      | GTR+I+G    | ND2_pos3                       | 1074-2115\3                    | ./analysis/phylofiles/758c36fd0bc596fc7dd42e872cae7f7b.phy
3      | GTR+I+G    | A2AB_pos1, A2AB_pos2, AQP2_pos1, AQP2_pos2, AR_pos1, AR_pos2, BDNF_pos1, BDNF_pos2, BDNF_pos3, GHR_pos1, GHR_pos2, RAG1_pos1, RAG1_pos2, vWF_pos1, vWF_pos2 | 2116-3246\3, 2117-3246\3, 3247-3580\3, 3248-3580\3, 3581-4457\3, 3582-4457\3, 4458-5105\3, 4459-5105\3, 4460-5105\3, 6147-7001\3, 6148-7001\3, 7002-8492\3, 7003-8492\3, 8493-9605\3, 8494-9605\3 | ./analysis/phylofiles/8626c398e670531d496787bc7f049571.phy
4      | GTR+G      | A2AB_pos3, AQP2_pos3, AR_pos3, BRCA_pos1, BRCA_pos2, BRCA_pos3, GHR_pos3, RAG1_pos3, vWF_pos3 | 2118-3246\3, 3249-3580\3, 3583-4457\3, 5106-6146\3, 5107-6146\3, 5108-6146\3, 6149-7001\3, 7004-8492\3, 8495-9605\3 | ./analysis/phylofiles/11197a6e2393cbe0acc3eba7c76afb45.phy


Scheme Description in PartitionFinder format
Scheme_step_23 = (ND2_pos1, ND2_pos2) (ND2_pos3) (A2AB_pos1, A2AB_pos2, AQP2_pos1, AQP2_pos2, AR_pos1, AR_pos2, BDNF_pos1, BDNF_pos2, BDNF_pos3, GHR_pos1, GHR_pos2, RAG1_pos1, RAG1_pos2, vWF_pos1, vWF_pos2) (A2AB_pos3, AQP2_pos3, AR_pos3, BRCA_pos1, BRCA_pos2, BRCA_pos3, GHR_pos3, RAG1_pos3, vWF_pos3);

RaxML-style partition definitions
DNA, p1 = 1072-2115\3, 1073-2115\3
DNA, p2 = 1074-2115\3
DNA, p3 = 2116-3246\3, 2117-3246\3, 3247-3580\3, 3248-3580\3, 3581-4457\3, 3582-4457\3, 4458-5105\3, 4459-5105\3, 4460-5105\3, 6147-7001\3, 6148-7001\3, 7002-8492\3, 7003-8492\3, 8493-9605\3, 8494-9605\3
DNA, p4 = 2118-3246\3, 3249-3580\3, 3583-4457\3, 5106-6146\3, 5107-6146\3, 5108-6146\3, 6149-7001\3, 7004-8492\3, 8495-9605\3